Supervisor’s research interests

• De novo genome assembly of plant genomes
• Functional annotation of plant genomes
• Transcriptomics and regulation in plants

Research highlights

My main research interests is in the field of plant genomics and trascriptomics. Currently, the main objects of research are the genomes and transcriptomes of plants such as F. esculentum and C. bursa-pastoris. You will be able to de novo assemble genomes, annotate them, and understand how genes works in plants

Main publications

• (2016) Anna V. Klepikova, Artem S. Kasianov, Evgeny S. Gerasimov, Maria D. Logacheva, Aleksey A. Penin. A High Resolution Map of the Arabidopsis thaliana Developmental Transcriptome Based on RNA-seq Profiling. Plant Journal. 19 November 2016 DOI: 10.1111/tpj.13312.
• (2017) Kasianov AS, Klepikova AV, Kulakovskiy IV, Gerasimov ES, Fedotova AV, Besedina EG, Kondrashov AS, Logacheva MD, Penin AA. High quality genome assembly of Capsella bursa-pastoris reveals asymmetry of regulatory elements at early stages of polyploid genome evolution. Plant Journal. 7 April 2017 DOI : 10.1111/tpj.13563
• (2019) Anna V. Klepikova, Ivan V. Kulakovskiy, Artem S. Kasianov, Maria D. Logacheva and Aleksey A. Penin An update to database TraVA: organ-specific cold stress response in Arabidopsis thaliana. BMC Plant Biology 2019 19(Suppl 1) :49 DOI : 10.1186/s12870-019-1636-y